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.../ref> Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fol ...TH]] topology family and of 13% in the same [[Structural Classification of Proteins database|SCOP]] fold family. The probabilities increase rapidly when TM-sco ...

...e sequence-structure motifs are used for the local structure prediction of proteins. Local structure can be expressed as fragments or as backbone angles. Locat The structural similarity between any two peptide segments was evaluated using a combinati ...

...l | vauthors = Xing Y, Li Z, Chen Y, Stock JB, Jeffrey PD, Shi Y | title = Structural mechanism of demethylation and inactivation of protein phosphatase 2A | jou ...

...e journal | vauthors = Witte G, Hartung S, Büttner K, Hopfner KP | title = Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase [[Category:Bacterial proteins]] ...

...onarily conserved networks of residues mediate allosteric communication in proteins.' |url=http://www.hhmi.swmed.edu/Labs/rr/SCA.html}}</ref> ...ino acid distribution different from the mean distribution observed in all proteins, they are said to have some degree of '''conservation'''. ...

...title = Crystal structure of the human vascular adhesion protein-1: unique structural features with functional implications | journal = Protein Science | volume ==Human proteins containing this domain== ...

...d to find the culprit? Or given a set of proteins of interest, which other proteins participate in pathways with them? ...e conference|last1=Lou|first1=Tiancheng|last2=Tang|first2=Jie|title=Mining Structural Hole Spanners Through Information Diffusion in Social Networks|book-title=P ...

...Enzyme that catalyzes the dephosphorylation of phosphoarginine residues in proteins}} ...]] that catalyzes the [[dephosphorylation]] of phosphoarginine residues in proteins.<ref name=":0">{{Cite journal|last1=Fuhrmann|first1=Jakob|last2=Subramanian ...

...al structure of putidaredoxin reductase from Pseudomonas putida, the final structural component of the cytochrome P450cam monooxygenase | journal = Journal of Mo ...

...cal<ref name="PUB00005246">{{cite journal |vauthors=Poulos TL, Li H |title=Structural variation in heme enzymes: a comparative analysis of peroxidase and P450 cr ...|doi=10.1111/j.1574-6976.1994.tb00040.x|doi-access=free }}</ref> Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding ...

...ANM)''' is a simple yet powerful tool made for [[normal mode]] analysis of proteins, which has been successfully applied for exploring the relation between fun ...e GNM has proven itself to accurately describe the vibrational dynamics of proteins and their complexes in numerous studies. Whereas the GNM is limited to the ...

...journal | vauthors = Doukov TI, Hemmi H, Drennan CL, Ragsdale SW | title = Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis ...athway of CO(2) fixation | journal = Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics | volume = 1784 | issue = 12 | pages = 1873–1898 | date = De ...

...n of heme binding in a novel dye-decolorizing peroxidase, TyrA | journal = Proteins | volume = 69 | issue = 2 | pages = 234–43 | date = November 2007 | pmid = These [[heme]] proteins are secreted by ''[[basidiomycetous]]'' [[fungi]] and [[eubacteria]]. ...

...hors = Schmitt E, Galimand M, Panvert M, Courvalin P, Mechulam Y | title = Structural bases for 16 S rRNA methylation catalyzed by ArmA and RmtB methyltransferas ...

| title = Maximum allowed solvent accessibilites of residues in proteins | title = Interior and surface of monomeric proteins ...

...gley TP, Ealick SE | title = Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiami ...

...eletal]] mesh, wherein it is oscillated by repercussions from active motor proteins. The magnitude of these random forces can be inferred from the frequency of ...ells are driven by thermal diffusion or by repercussions from active motor proteins like non-muscle myosin II shaking the cellular cytoskeleton. ...

...urnal | vauthors = Bohl CE, Gao W, Miller DD, Bell CE, Dalton JT | title = Structural basis for antagonism and resistance of bicalutamide in prostate cancer | jo ...ffinity]] and [[Chemical specificity|specificity]]. Specificity means that proteins distinguish the highly specific binding partner from less specific partners ...

...by a collection of servers and assigns each pair a 3D-Jury score, based on structural similarity. To improve accuracy of the final model, users can select the pr ...using automated Robetta protocols | author=Chivian D | year=2005 | journal=Proteins | volume=61 | issue=S7 | pages=157–166 | url=http://www3.interscience.wiley ...

|title=Better Sequence Searches Of Genes And Proteins Devised|date=Mar 7, 2009 ...regions of similarity indicating a relationship between the two, or more, proteins. In order to have a homologous relationship, the sum of scores over all the ...