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...|title=Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model |journal=Internatio .../math> is the <math>n</math>-th sample <math> L_x </math> (unknown) hidden factors. ...

...velopmental Biology|last = Gilbert|first = S.F.| chapter=Differential Gene Transcription |publisher = Sinauer Associates|year = 2000|url = https://www.ncbi.nlm.nih. ...}}</ref>) and a better understanding of the complexities of the regulatory factors involved. ...

...t exhibits toxin-like behavior due to [[Transcription factor|transcription factors]] or [[Antitoxin|antitoxins]].<ref name=":0" /> In contrast to other common ...ese three factors are present at multiple levels where LexA is involved in transcription [[Downregulation and upregulation|downregulation]], SymR RNA is involved in ...

...rectified factor model coupled with its Gibbs sampling solution, where the factors follow a [[Dirichlet process]] mixture of rectified Gaussian distribution, ...

...oline 4-hydroxylase, modulates activity of hypoxia-inducible transcription factors |author1 = Oehme, F. |author2 =Ellinghaus, P. |author3 =Kolkhof, P. |author ...le factors|Hypoxia-inducible factor]] (HIF) is an evolutionarily conserved transcription factor<ref>{{cite journal |pmid=9731218 |year=1998 |last1=Bacon |first1=N. ...

...he main diagonal in dual-reporter studies is the assumption that extrinsic factors cause positive expression correlations between the two reporters. In fact, * ''Organelle distributions'': random factors in the quantity and quality of organelles (for example, the number and func ...

...ors. Each individual expresses <math>n</math> genes encoding transcription factors. The product of each gene can regulate the expression level of itself and/o ...

...anscription, make up only 2-3% of the [[genome]], but encompass 94.4% of [[transcription factor]] binding sites.<ref>{{cite journal | vauthors = Klemm SL, Shipony Z ...ppening within a given cell and the contributions of various transcription factors to those processes.<ref name="Tedesco_2022" /> ...

...ed by a direct <math>P(T|S)</math> model. However, the noisy-channel model factors the model into two parts which are appropriate for the situation, and conse ...quently, the noisy-channel model would output <math>T_2</math> as the best transcription. ...

.... Once the RNA-protein [[Cross-link|crosslinks]] are formed, MaP [[reverse transcription]]<ref name=":0">{{Cite journal |last1=Smola |first1=Matthew J. |last2=Rice ...and the RNA-bound proteins are digested into peptide adducts. MaP reverse transcription is then performed to label the protein-RNA binding sites through peptide ad ...

...ch as extracting useful information from big data, eliminating confounding factors and providing more sensible interpretation. ...correlations were first computed between regulatory genes at the level of transcription and a gene expression data set. The correlation coefficient then underwent ...

...cel at detecting subtle regulatory elements such as motifs, enhancers, and transcription factor binding sites. This automated recognition eliminates the need for ma ...2024 |title=Mechanisms and biotechnological applications of transcription factors|pmc=10482752 |last1=He |first1=H. |last2=Yang |first2=M. |last3=Li |first3= ...

...uperfamily of [[nuclear receptor]]s, are transcription factors that induce transcription of target genes after binding to specific DNA sequences in their [[Promoter ...y introducing into a situable cell line specific DNA sequences that induce transcription of target genes of a readily measurable protein (the so-called [[reporter g ...

...asensitivity than that seen in networks composed entirely of transcription factors or composed entirely of enzymes.<ref>{{cite journal |doi=10.1371/journal.pc ...is transmitted through multiple intermediate regulators before activating transcription.<ref>{{cite journal |pmid=11408658 |year=2001 |last1=Kalir |first1=S |last2 ...

...ive bacteria, and protein arginine phosphorylation regulates transcription factors, in addition to tagging rogue proteins for degradation in gram-positive bac ...

...Studies in human [[monozygotic twins]] have provided evidence that genetic factors affect "normal" sleep patterns as well, meaning ones where no individual ha ...ark cycle) and is regulated by a [[Transcription translation feedback loop|transcription-translation feedback loop]] (TTFL). In humans, there are multiple genes inv ...

...e up regulation of other specific genes, causing all of the cells to begin transcription at approximately the same time. In other words, when the local concentratio ...nsing and anaerobiosis has a significant impact on production of virulence factors of this organism.<ref>Cornelis P. 2008. Pseudomonas: Genomics and Molecular ...

...lasticity, which harbour putative binding sites for neuronal transcription factors within accessible chromatin regions."<ref>{{cite journal |last1=Winick-Ng | ...e factors' interactions are under consideration. It can show how different factors are linked and highlight their interactions and connections. For example, i ...

...hted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response |journal=Frontiers in Genetics |d ...

...cell processes involve complex processes on highly compacted DNA, such as transcription, replication, recombination, DNA repair, and cell division. * Accessory factors ...