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...ms including secondary structure prediction, protein-protein interactions, protein-drug interaction, and free energy calculations. ...riables for representing the coordinates or the [[dihedral angle]]s of the protein structure. The variables are originally all continuous values and, to trans ...

...speed limit with large, sub-microsecond pressure jumps. | journal = Nature Methods | volume = 6 | pages = 515–9 | pmid = 19483692 | issue=7}}</ref> The abili ...f a Conformational Transition and the ATP Hydrolysis Step Using Relaxation Methods with a Dictyostelium Myosin II Mutant Containing a Single Tryptophan Residu ...

...]] promotor. YFP based indicators are mutated forms of [[Green fluorescent protein]] (GFP). YFP contains four point mutations and has a red-shifted excitation ...(YFP-H148Q V163S). If a fluorescent indicators is based on one fluorescent protein only, it doesn't allow for ratiometric measurements. Hence, a rationale for ...

...essible surface area''' or '''relative solvent accessibility (RSA)''' of a protein residue is a measure of [[Solvent exposure|residue solvent exposure]]. It c ASA and hence RSA values are generally calculated from a protein structure, for example with the software DSSP.<ref name = "DSSP"> ...

...bibcode = 2005PNAS..102.6201B | doi-access = free }}</ref> An example of a protein–ligand complex.]] ...title = Insights into Protein-Ligand Interactions: Mechanisms, Models, and Methods | journal = International Journal of Molecular Sciences | volume = 17 | iss ...

...0.1073/pnas.0801715105| title = A generative, probabilistic model of local protein structure| journal = Proceedings of the National Academy of Sciences| volum ...h>=0 has been used for kernel density estimates of the distribution of the protein dihedral angles <math>\phi</math> and <math>\psi</math>.<ref name="Shapoval ...

...pharmacology]], and [[drug discovery]]. It is particularly useful in the [[protein purification]] stage of biotechnology where accurate concentrations of vari Determining the relative ratio of protein to DNA is common practice and can be calculated by finding the slope at the ...

...s known as [[PseAAC]] (Pseudo Amino Acid Composition) that is applied to [[protein sequence]]<nowiki/>s.<ref name="Chou01" /> ...journal |last=Chou |first=Kuo-Chen |date=2011-03-21 |title=Some remarks on protein attribute prediction and pseudo amino acid composition |url=https://linking ...

...nce Part C | chapter = Dinoflagellate luciferin-binding protein | series = Methods in Enzymology | volume = 305 | pages = 258–76 | year = 2000 | pmid = 108126 ''Dinoflagellate'' luciferase is a single protein with three luciferase [[Protein domain|domains]] and an N-terminal domain.<ref name="foo" /> The three doma ...

{{Short description|Protein-RNA binding probing method}} ...auro |last5=Weeks |first5=Kevin M. |date=2020-10-19 |title=Analysis of RNA–protein networks with RNP-MaP defines functional hubs on RNA |journal=Nature Biotec ...

...omics: workflows, potential, pitfalls and future directions|journal=Nature Methods|volume=9|issue=6|year=2012|pages=555–566|issn=1548-7091|doi=10.1038/nmeth.2 ...logy)|cell]]) of the native, light peptide, and by extension, its parent [[protein]].<ref name="LangePicotti2008"/> ...

...f the protein 4RepCT, which is a self-assembling recombinant dragline silk protein, derived from the nursery-web spider along the axis of the filament.<ref na ===== Methods ===== ...

...es with processing steps, like [[pasteurization]]. However, in some cases protein adsorption is used to improve food quality, as is the case in [[Finings|fin ==Protein adsorption== ...

{{short description|Set of machine learning methods}} ...due to kernel selection while allowing for more automated machine learning methods, and b) combining data from different sources (e.g. sound and images from a ...

...me]]s that engage in [[electron transfer]] reactions and it is part of the methods available to study [[enzyme kinetics]].{{Citation needed|date=September 202 ...and provided that it is not [[Denaturation (biochemistry)|denatured]], the protein can be fruitfully interrogated by monitoring current as a function of [[ele ...

...oneering work on [[chaperone (protein)|molecular chaperones]]. Some of the methods developed by Kaiser's laboratory became important in genetic engineering. .... In the 2000s his laboratory team did research on genetic and biochemical methods to control the swarm and propagation behavior of the bacterial species ''[[ ...

...AlphaFold uses Monte Carlo sampling to explore the vast space of possible protein conformations. ...While primarily using reinforcement learning, it incorporates Monte Carlo methods for exploring strategy spaces in StarCraft II. ...

...rd deduplication. In bioinformatics, it has been used to predict [[protein-protein interactions]] (PPI). It is also used to identify hidden groups of terroris Matrix factorization based methods commonly use this formulation. ...

...bcode=2011PNAS..108E1293M|doi-access=free}}</ref> The common idea of these methods is to use [[statistical modeling]] to quantify the strength of the direct r ...20714458 |issn=0036-8075}}</ref> and the modeling of [[Molecular evolution|protein evolution]].<ref>{{Cite journal |last1=Rodriguez-Rivas |first1=Juan |last2= ...

...re.png|thumb|The [[Discrete Fourier transform|DFT]]-method for identifying protein-coding segments of DNA]] ...ty''' in the field of [[Genomics]] is a property that is characteristic of protein-coding [[Nucleic acid sequence|DNA sequences]]. The existence of this prope ...