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{{Short description|Bioinformatics software to aggregate protein structure predictions}} ...|journal=Bioinformatics |volume=19 |issue=8 |pages=1015–1018 |doi=10.1093/bioinformatics/btg124 |issn=1367-4803 |oclc=110817016 |pmid=12761065 |doi-access=free}}</r ...

|journal=Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms |title = Algorithms and Computation ...

..., 22(22):2715-21, 2006 ([https://web.archive.org/web/20090409002832/http://bioinformatics.oxfordjournals.org/cgi/reprint/btl472?ijkey=GR3m5VV6yTz1jEx&keytype=ref PDF ...e//Lehre/Courses/2011_WS/V_BioinfoII/probalign-partition-func.pdf Lecture "Bioinformatics II" at University of Freiburg]</ref> ...

...r [[statistical classification|classified]], e.g. in [[text mining]] and [[bioinformatics|gene analysis]].<ref> ...nels for remote homology detection and motif extraction|journal=Journal of Bioinformatics and Computational Biology|volume=3|issue=3|pages=527–550|doi=10.1142/s02197 ...

...f all suffixes of each string in <math>S</math>. It is primarily used in [[bioinformatics]] and string processing. == Construction Algorithms and Implementations == ...

===Algorithms for computing the metric=== ...netic trees | volume = 36 | issue = 20 | pages = 5007–5013 | doi = 10.1093/bioinformatics/btaa614| pmid = 32619004 | url = http://dro.dur.ac.uk/31189/1/31189.pdf }}< ...

...ref> This algorithm is an improvement over previously known quadratic time algorithms.<ref name=":0" /> The maximum scoring subsequence from the set produced by The Ruzzo–Tompa algorithm has applications in [[bioinformatics]],<ref name="karlin" /> [[web scraping]],<ref name="pasternack">{{cite book ...

...d in his 1989 text ''Probabilistic Reasoning in Expert Systems: Theory and Algorithms''.<ref name="neoexpert" /> ...first1=Richard|title=Probabilistic Reasoning in Expert Systems: Theory and Algorithms|date=1989|publisher=Wiley|isbn=978-0471618409}}</ref> The text defines a ca ...

...5716 |journal=Bioinformatics |volume=33 |issue=1 |pages=35–41 |doi=10.1093/bioinformatics/btw539 |issn=1367-4803}}</ref><ref>{{Cite journal |last=Ye |first=Dong-Xin ...ge for generating various modes of pseudo nucleotide compositions |journal=Bioinformatics |volume=31 |issue=1 |pages=119–20 |year=2015 |last1=Chen |first1=Wei |last2 ...

...Indexes], ''Proceedings of the 14th Annual SIAM/ACM Symposium on Discrete Algorithms,'' January 2003, 841–850.</ref> is a [[compressed data structure]] for [[pa ...Compression: Experiments on Suffix Arrays and Trees'', ACM Transactions on Algorithms'', 2(4), 2006, 611–639.</ref> and it also supports fast ''in-situ'' pattern ...

...=1.5.2|operating_system=[[UNIX]], [[Linux]], [[Apple Macintosh|Mac]]|genre=Bioinformatics tool|licence=Open source}} Most existing programs that run multiple sequence alignment algorithms are based on progressive alignment where the process starts with a "null al ...

{{about|a technique in the design of graph algorithms|the use of color to display information|color code||Color code (disambiguat ...theory|graph]]. The traditional color-coding algorithm is [[probabilistic algorithms|probabilistic]], but it can be [[Derandomization#Derandomization|derandomiz ...

...-authored with Robert Irving, ''The Stable Marriage Problem: Structure and Algorithms''.<ref name=stable>{{cite book | title = The stable marriage problem: structure and algorithms ...

...quire different kernels. Instead of creating a new kernel, multiple kernel algorithms can be used to combine kernels already established for each individual data ...ltiple kernel learning and its application to biomedical data fusion]. BMC Bioinformatics 2010, 11:309</ref> ...

...informatics | volume = 31 | issue = 22 | pages = 3584–3592 | doi = 10.1093/bioinformatics/btv419| pmid = 26209798 | arxiv = 1502.06256 | bibcode = 2015Bioin..31.3584 ...rn of the specific spaced seed) to mismatch without penalty, thus allowing algorithms that use the general "hit-extend" strategy of alignment to explore addition ...

...es. Structured prediction is used in a wide variety of domains including [[bioinformatics]], [[natural language processing]] (NLP), [[speech recognition]], and [[com ...particular, [[Bayesian network]]s and [[random field]]s are popular. Other algorithms and models for structured prediction include [[inductive logic programming] ...

...Bioinformatics | volume = 19 | issue = 16| pages = 2131–2140 | doi=10.1093/bioinformatics/btg296| pmid = 14594719 | doi-access = free }} [[Category:Machine learning algorithms]] ...

| doi = 10.1093/bioinformatics/17.5.461 | journal = Bioinformatics ...

...Bioinformatics|volume=36 |issue=6 |language=en|pages=1925–1927|doi=10.1093/bioinformatics/btz848|issn=1367-4803|pmc=7703759|pmid=31730192}}</ref> ...gh-quality genomes from complex metagenomic datasets |journal=Briefings in Bioinformatics |date=19 November 2022 |volume=23 |issue=6 |doi=10.1093/bib/bbac431}}</ref> ...

...0 | pages = 1374–1381 |date=October 2002 | pmid = 12376382 | doi = 10.1093/bioinformatics/18.10.1374 | doi-access = free }}</ref> ...ider [[DNA sequence|DNA strings]] for which Σ ={G, C, T, A}. There exist [[algorithms]] that deal with protein strings as well. The PMS problem is also known as ...